National Farmers’ Federation president Fiona Simson will also be attending the meeting alongside Australia chief vet Mark Schipp to come up with a strategy to help Indonesia combat the disease.
According to experts, if the disease crosses over to Australia, it could cost the agricultural industry up to $80 billion.
Ms Simson told AAP those who throw out their shoes before arriving back in Australia will be given a voucher to put towards a new pair.
"Foot and mouth disease loves to hitchhike on shoes," she said.
"That means your dirty old holiday pluggers could be the thing that brings this disaster to our shores.
"We need travellers to be aware that they could inadvertently bring this virus in on their shoes, or on their clothing, or on goods they might bring into Australia."
Airports have cracked down on biosecurity following the outbreak of the disease in Bali with sniffer dogs present at a number of Australian airports.
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